PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2744_iso_6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 209aa    MW: 24280 Da    PI: 9.5056
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2744_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-173984148
                                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                        rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  cra_locus_2744_iso_6_len_933_ver_3 39 RGKMTPHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 84
                                        89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-201990IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-82045IPR009057Homeodomain-like
PROSITE profilePS5129426.4643488IPR017930Myb domain
SMARTSM007171.8E-163886IPR001005SANT/Myb domain
PfamPF002495.8E-153983IPR001005SANT/Myb domain
CDDcd001674.82E-114184No hitNo description
Gene3DG3DSA:1.10.10.603.1E-204685IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
FIAKVSGLKV AGDTNNRFEK KGKSCRLRWV NYLHPGLKRG KMTPHEERLV LELHSKWGNR  60
WSRIARKLPG RTDNEIKNYW RTHMRKKAQD QRKKASNNNN NLSPTSSSSL SNCSSSSSNS  120
QGNNSPTVDS VLITETKDRS FYDTGGFEFD QIEAEKKKNM SNEEETEELE RGPKFYSMDE  180
IWKDIEMSED DAIKPVNYDY QKMDSPQMW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-17228839105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-17228893159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-17228893159MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-17228862128MYB TRANSFORMING PROTEIN
1mse_C3e-17228839105C-Myb DNA-Binding Domain
1msf_C3e-17228839105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651059.15e-67PREDICTED: transcription factor MYB59
SwissprotQ9LX823e-54MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A068UKJ21e-64A0A068UKJ2_COFCA; Uncharacterized protein
STRINGVIT_06s0004g04140.t013e-62(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154